Index

A

add_pre_normalized_col() (in module analysis.functions) align_waveform() (in module analysis.functions) analysis module analysis.functions module analysis.load module analysis.parameters module

analysis.song module analysis.spike module analysis.waveform module analyze_waveform() (ClusterInfo method) AudioData (class in analysis.spike) AudioInfo (class in analysis.song)

B

BaselineInfo (class in analysis.spike) BoutInfo (class in analysis.song) (class in analysis.spike)

BurstingInfo (class in analysis.spike) butter_bandpass() (in module utils.spect) butter_bandpass_filter() (in module utils.spect)

C

category() (Correlogram method) ClusterInfo (class in analysis.spike) col_names() (Database method)

Correlogram (class in analysis.spike) create_col() (Database method) create_db() (in module database.load)

D

data_to_result() (in module utils.intan.intanutil.data_to_result) Database (class in database.load) database.load module

DBInfo (class in database.load) demarcate_bout() (in module analysis.functions)

E

execute() (Database method) exists() (in module utils.functions) extract() (AudioData method) (AudioInfo method) (NeuralData method)

extract_ind() (in module utils.functions)

F

find_data_path() (in module utils.functions)

find_str() (in module utils.functions) FundamentalFreq (class in analysis.song)

G

get_ax_lim() (in module utils.draw) get_basis_psd() (in module analysis.functions) get_bird_colors() (in module analysis.functions) get_bytes_per_data_block() (in module utils.intan.intanutil.get_bytes_per_data_block) get_conditional_spk() (ClusterInfo method) get_correlogram() (BaselineInfo method) (ClusterInfo method) get_entropy() (NoteInfo method) get_ff() (in module analysis.functions) get_fr() (PethInfo method) get_fr_cv() (PethInfo method) get_half_width() (in module analysis.functions) get_isi() (BaselineInfo method) (ClusterInfo method) (in module analysis.spike) get_jittered_corr() (BaselineInfo method) (ClusterInfo method) get_mean_fr() (MotifInfo method) get_motif_duration() (MotifInfo method) get_motif_info() (SongInfo method)

get_nb_bouts() (in module analysis.functions) get_note_duration() (MotifInfo method) get_note_info() (ClusterInfo method) get_note_peth() (NoteInfo method) get_note_type() (in module analysis.functions) get_pcc() (in module analysis.spike) (PethInfo method) get_peth() (in module analysis.spike) (MotifInfo method) get_pre_motor_spk_per_note() (in module analysis.functions) get_psd_mat() (in module analysis.functions) get_sig() (in module utils.stats) get_snr() (in module analysis.functions) get_sparseness() (PethInfo method) get_spectral_entropy() (AudioData method) (AudioInfo method) (in module analysis.functions) get_spectrogram() (in module analysis.functions) get_spk_count() (PethInfo method) get_ts() (FundamentalFreq method)

I

ISI (class in analysis.spike)

J

jitter_spk_ts() (ClusterInfo method) (in module analysis.spike) (MotifInfo method) (NoteInfo method)

L

list_files() (ClusterInfo method) (in module utils.functions) (SongInfo method) load_audio() (in module analysis.load) load_cluster_db() (DBInfo method)

load_db() (ProjectLoader method) load_from_db() (FundamentalFreq method) load_neural_data() (NeuralData method) load_notmat() (AudioInfo method) load_song() (in module analysis.load) load_song_db() (DBInfo method)

M

make_dir() (in module utils.save) mean_fr (BaselineInfo property) (NoteInfo property) mean_nb_intro() (SongInfo method) module analysis analysis.functions analysis.load analysis.parameters analysis.song analysis.spike analysis.waveform database.load utils.draw utils.functions utils.intan utils.intan.intanutil utils.intan.intanutil.data_to_result utils.intan.intanutil.get_bytes_per_data_block utils.intan.intanutil.notch_filter utils.intan.intanutil.qstring utils.intan.intanutil.read_header utils.intan.intanutil.read_one_data_block utils.intan.load_intan_rhd_format utils.save utils.spect utils.stats

MotifInfo (class in analysis.song) (class in analysis.spike) myround() (in module utils.functions)

N

nb_bouts() (ClusterInfo method) (SongInfo method) nb_files (ClusterInfo property) (SongInfo property) nb_motifs() (ClusterInfo method) (SongInfo method)

nb_note (NoteInfo property) NeuralData (class in analysis.spike) normalize() (in module utils.functions) normalize_from_pre() (in module analysis.functions) notch_filter() (in module utils.intan.intanutil.notch_filter) NoteInfo (class in analysis.spike)

O

open_folder (AudioData property) (AudioInfo property) (ClusterInfo property) (MotifInfo property) (NeuralData property) (ProjectLoader property) (SongInfo property)

open_folder() (in module utils.functions)

P

paired_ttest() (in module utils.stats) para_interp() (in module utils.functions) pcc_shuffle_test() (in module analysis.spike) PethInfo (class in analysis.spike) piecewise_linear_warping() (MotifInfo method)

plot() (BoutInfo method) (ISI method) plot_corr() (Correlogram method) plural() (in module utils.intan.load_intan_rhd_format) print_name() (BoutInfo method) ProjectLoader (class in database.load)

R

rank_sum_test() (in module utils.stats) read_header() (in module utils.intan.intanutil.read_header) read_not_mat() (in module analysis.load) read_one_data_block() (in module utils.intan.intanutil.read_one_data_block)

read_qstring() (in module utils.intan.intanutil.qstring) read_rhd() (in module analysis.load) (in module utils.intan.load_intan_rhd_format) read_spk_txt() (in module analysis.load) remove_right_top() (in module utils.draw)

S

save2json() (in module utils.save) save_fig() (in module utils.save) select_context() (MotifInfo method) (NoteInfo method) select_index() (NoteInfo method) set_fig_size() (in module utils.draw)

signed_rank_test() (in module utils.stats) song_call_prop() (SongInfo method) SongInfo (class in analysis.song) spectrogram() (AudioData method) (AudioInfo method) (in module utils.spect) SyllableNetwork (class in analysis.song)

T

to_csv() (Database method) to_dataframe() (Database method)

total_nb_notes_in_bout() (in module analysis.functions) two_sample_ks_test() (in module utils.stats) two_sample_ttest() (in module utils.stats)

U

unique() (in module utils.functions) unique_nb_notes_in_bout() (in module analysis.functions) update() (Database method) utils.draw module utils.functions module utils.intan module utils.intan.intanutil module utils.intan.intanutil.data_to_result module utils.intan.intanutil.get_bytes_per_data_block module

utils.intan.intanutil.notch_filter module utils.intan.intanutil.qstring module utils.intan.intanutil.read_header module utils.intan.intanutil.read_one_data_block module utils.intan.load_intan_rhd_format module utils.save module utils.spect module utils.stats module

Z

z_test() (in module utils.stats)